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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922346.1_cds_XP_016471134.1_63510
CDS Infomation

[gene=LOC107793322] [db_xref=GeneID:107793322] [protein=protein CHUP1, chloroplastic-like] [protein_id=XP_016471134.1] [location=join(15876..17120,17817..17948,18029..18210,18356..18467,19948..20082,20212..20346)] [gbkey=CDS]
Sequence

ATGGTTGCTGGCAAAGTAAAAACGGCTATGGGTTTACAGAAATCACCTGCAAATCCAAAG
CCATCAAAGCAAGATTCAGTTCCCAAGCCTCCTTCTCCTTCACCCAGCTGCACAAAGCAG
CAGACTACTCCCAAAAGTGCAGGATTTTCTCGCTCTTTCGGTGTTTACTTTCCCCGTTCC
TCCGCCCAAGTCCAGCCTCGTCCACCGGACGTTGCAGAGCTCCTACGCTTAGTCGAAGAG
TTACGCGAAAGAGAGTCCCGTTTAAAAACCGAGATCCTCGAGAAGAAACTGCTCCAGGAA
TCAGTTGCTATTCTTCCAGTGTTGGAGAGTGAGATCACCCTAAAAGATGCAGAAATAGAA
CGAAAAAAACGAATGATTGAATGCTTGGGAGTGGAAAATGAAAGGCTTAGACAAGAAGTA
GAGATGTTGCACATTGAGCTAGTGAAGCAAAACGGGAGGCACGAAGAGAGGGTAAAAGCT
ATGGAAGCTGAAATTTCTGAGCTGAAGAAAGCTAATGAAGAGTTATCAGCTCATAGGCTT
GTGGATGCTGTAACAAATGGTGCTCACAACAAATCTAACATGACCAAGTATTTGAGAAAA
TGCGTGACTCAACCTAGCATCAGTGTGGCTTCGAAACCCGAGTGTGAGATGAAAGAGGAA
ATAGTTGGTGCAATGGAAATGTGTGACAGGCCTAGACATTCTCGGAGTAATTCAGAGGAG
TTAGCTGAGATATCTGCTGGCATTATGAGTTTGAGATCACGTGTTCCACGTGTTCCTAAA
CCACCACCACGGCCATCGTCGACGCTATTGCCATCGTCATCGTCATCGTCATCGTTATCT
TCTTCTTCATCTTCTCGGTCTTATAGTTCTTTATCAGATTCAGCTGAACGTGCTTTAGCT
GAAATTTCTAACATTCCACCTCCACCTCCACCACCTCCACTGCCAGCGACGGCGCCCAAA
ATGTTGGCACCAGTTCCTCCTCCGCCTCCTCCGCCACCACCTCCAGCGGCGGCGGTCAAA
ACAGGCCCCCCGCCACCTCCACCACCACCTCCGAAAGGATTAAAGCCCGTGCCAGCAAAG
GTTAGGCGTATACCTGAAGTGGTGGAATTTTATCACTCTCTAATGCGGAGGGACTGCCGA
AGAGATTCCGGTGCCGGAGTTAGTGGTGCCGCCGATGCTCCAGCGACAGCCACGGCAAAG
GATATGATCGGAGAAATTGAGAACCGGTCTGCCTATTTACTGGCGATTAAAACAGATGTT
GAGACACAAGGAGATTTTATAAGGTTTTTGATCAAAGAAGTGGAAAATGCTGCATTCGCA
GATATTGAGGATGTTGTGCCTTTTGTAAAATGGCTTGATGATGAGCTCTCTTACCTGGTT
GATGAAAGGGCTGTTCTGAAACACTTCGAATGGCCGGAGCAAAAGGCTGATGCATTGAGA
GAAGCTGCATTTGGATATTGTGATCTGAAGAAACTTGAATCTGAGGCATCGTCCTTTCGC
GATAATCCCAGACAACCCTGTGGCACAGCTCTTAAGAAAATGCAGTCTTTATATGAGAAA
TTAGAGCATGGACTTTACAATTTGTCAAGAATGAGAGAATCAGCTTCAAAGAGATATAAA
GTATTCCAAATTCCAATTGAGTGGATGCTGGATACTGGTTATGTTACGCAGATAAAGCTG
GCATCAGTAAAATTAGCCATGAAGTACATGAAGAGGGTATCCGCAGAGTTAGAAATGGTT
GGTGGTGGTCCCGAAGAAGAAGAGCTTATAATTCAAGGCGTTAGGTTCGCCTTTCGAGTA
CATCAGTTTGCCGGAGGTTTTGATGTGGAGACAATGAGAGCATTCCAAGAGTTGAGAGAC
AAAGCAAGATCTTGCCATATACAATGTCAAAATCAGCAACAGCAGCAACACAAATATGTT
TGCAGATTTACACCTTGCTAA

Peptide Sequence

PEP ID

XP_016471134.1
PEP Infomation

PREDICTED: protein CHUP1, chloroplastic-like [Nicotiana tabacum]
Sequence

MVAGKVKTAMGLQKSPANPKPSKQDSVPKPPSPSPSCTKQQTTPKSAGFSRSFGVYFPRS
SAQVQPRPPDVAELLRLVEELRERESRLKTEILEKKLLQESVAILPVLESEITLKDAEIE
RKKRMIECLGVENERLRQEVEMLHIELVKQNGRHEERVKAMEAEISELKKANEELSAHRL
VDAVTNGAHNKSNMTKYLRKCVTQPSISVASKPECEMKEEIVGAMEMCDRPRHSRSNSEE
LAEISAGIMSLRSRVPRVPKPPPRPSSTLLPSSSSSSSLSSSSSSRSYSSLSDSAERALA
EISNIPPPPPPPPLPATAPKMLAPVPPPPPPPPPPAAAVKTGPPPPPPPPPKGLKPVPAK
VRRIPEVVEFYHSLMRRDCRRDSGAGVSGAADAPATATAKDMIGEIENRSAYLLAIKTDV
ETQGDFIRFLIKEVENAAFADIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKADALR
EAAFGYCDLKKLESEASSFRDNPRQPCGTALKKMQSLYEKLEHGLYNLSRMRESASKRYK
VFQIPIEWMLDTGYVTQIKLASVKLAMKYMKRVSAELEMVGGGPEEEELIIQGVRFAFRV
HQFAGGFDVETMRAFQELRDKARSCHIQCQNQQQQQHKYVCRFTPC

Transcript Sequence

Gene sequence data has not been registered.